No, they are two different things. Just because CMR won the right to impose their own contract doesn't mean that CMR asked the court to prevent the pilots from striking. If I'm correct, there was talk about it but CMR did not follow through with it.
http://www.orlandosentinel.com/business/custom/tourism/orl-comair2906dec29,0,7037927.story?track=rss
The relevant line from that article: "Gallagher reported on negotiations in a hearing on the commuter airline's request for an injunction to stop the pilots from walking out."