Part of the PTS is check list usage. Nowhere does it say to retract the flaps on touchdown.
That 1 iteam may seem silly to all of you, but when someone deviates from it by moving the flaps up, what's to stop them from doing other things that are not on the checklist.
That really depends on the checklist.
Use of flaps is as much technique as it is procedure. While a manufacturer may provide recommended procedures, technique permits varying ways to move the flaps...and that includes raising flaps on landing.
Raising flaps as part of a short field technique is appropriate, in fact.
A checklist in normal operation is not a "do" list, but a list of items to be checked as having been done in a flow. Certain procedures do require specific sequences of events...but use of flaps on a normal landing isn't one of them.
Avoiding touching anything on the runway is a common practice among many flight schools, and even among many operators, but it isn't universal, and it isn't even appropriate for many operations.