Not sure I get your meaning there...either you mean it will windmill with the starter engaged (common when the starter fails and doesn't withdraw the bendix...which may or may not disengage the engine as it spins up, especially if it's the bendix drive that's failed), or you mean that the engine can windmill in flight for a restart. Either way, that's not really the issue.
Suppose the starter has failed for another reason, such as a short in the start circuitry? The starter is wired close to or directly to the battery, or the battery through the start relay. It has the potential to receive a lot of amperage which may be going some place else, which in turn may result in a fire, or damage to another component. Merely suggesting that it doesn't work and "is made safe" won't cut it. How do you propose to "make it safe?"
Suppose that starter isn't properly disengaging, or is making metal, which is entering the starter ring area...if the bendix has come apart, it may make big metal parts which may engage the starter ring or gear which can cause havoc, balance and vibration problems, or worse.
Suppose the starter has experienced a failed bearing internally and hasn't disengaged. You're potentially creating a lot of heat which could result in a starter frame fire, for lightweight starters with magnesium in the frame. That becomes an uncontrollable Class D fire which you're not going to put out, and a fire of that type will consume your engine and keep going.
What is it that you don't know yet? Keep asking that question when faced with something so seemingly simple. Yes, you can handprop the engine, but suppose that's really not the problem? When you have a mechanical problem, the soloution isn't to handprop it and go fly anyway. The airplane is talking to you, and you may not understand it's language. It may be telling you about something else entirely, and how well you understand depends on how close you listen. You don't listen with your ears, but through a mechanic who finds and fixes the small problem before it becomes a big problem.
I've seen starters and generators fall off engines, doing damage along the way. You could have something as simple as a poor connection, loose or corroded. Fix it. You could have a broken brush...but what broke it? Find out. Then fix it. This is important to know, and with most things mechanical, what you see on the surface is seldom the entire picture.
What in your post changes what I orginally said? LOL Rendered safe could mean all of the above that you discussed problem is once you did that you might as well fix it. If its say the windings in the motor and you know that and you disable the juice going to the starter I don't see the safety of flight issue. Thats like saying a MEL on a heater in Seneca which they have heater is'nt working. So you disable any possiblity of it starting operating or what not. I don't see the problem. Fact is airliners takeoff everyday with inop APUs. They GPU one engine and use bleeds for the other, whats the big deal? I guess the difference is the manufactuer has decided that its safe to do, which most of us here are no engineers that designed the aircraft.
Let me guess you've never hand started a aircraft (with a generator) with a dead battery? I don't want to hear the battery won't have enough voltage for the field argument here because I said generator. LOL
I love your posts BTW avbug