I agree that you should wait until you meet the stated minumums to apply. While SWA may indeed throw your app out, I believe the 2 year wait to re-apply is from an unsuccessful interview, and not just from applying before you meet the minumums. Besides, oppsahh is correct. They are not interviewing, and since they have over 200 pilots waiting in the pool and no classes scheduled until perhaps spring of next year, I would be in no hurry to apply.
JetBlue requires you complete their online application, and I believe I read on this board somewhere that if you attempt to apply without their stated minimums, the system will not accept your application. Keep in mind that JetBlue, in addition to requiring 1000 hrs turbine PIC, also requires 1000 hrs in aircraft with a max takeoff weight in excess of 20,000 lbs.